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, 16:14, 25 September 2013
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| **P(non-reference heterozygote) = 0.01 * 2/3 | | **P(non-reference heterozygote) = 0.01 * 2/3 |
| **P(non-reference homozygote) = 0.01 * 1/3 | | **P(non-reference homozygote) = 0.01 * 1/3 |
− | *Two options of mutation model: | + | *Mutation model: Transitions (C <-> T or A <-> G) accounts for most variants, while transversions account for minority of variants |
− | **Transitions (C <-> T or A <-> G) accounts for most variants, while transversions account for minority of variants
| + | **transition has 2/3 probability |
− | ***transition has 2/3 probability
| + | **each transversion has 1/6 probability |
− | ***each transversion has 1/6 probability
| + | |
− | **Uniform (uninformative) prior for transition to transversion ratio | + | *New implementation: Alternative mutation model with uniform (uninformative) prior for transition to transversion ratio |
− | ***each mutation has a 1/3 probability
| + | **each mutation has a 1/3 probability |
| + | **add --uniformTsTv in command line to enable this alternative mutation model |
| + | **download here |
| | | |
| == Download == | | == Download == |