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198 bytes added
, 01:26, 14 August 2010
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| --xStart ''sexChromosomeStart'' Start of the non-pseudo-autosomal portion of the X (2,709,521 bp in build 36) | | --xStart ''sexChromosomeStart'' Start of the non-pseudo-autosomal portion of the X (2,709,521 bp in build 36) |
| --xStop ''sexChromosomeEnd'' End of the non-pseudo-autosomal portion of the X (154,584,237 bp in build 36) | | --xStop ''sexChromosomeEnd'' End of the non-pseudo-autosomal portion of the X (154,584,237 bp in build 36) |
| + | |
| + | For NCBI genome build 36, you should use the settings --xChr X --xStart 2709521 --xStop 154584237 |
| + | |
| + | For NCBI genome build 37, you should use the settings --xChr X --xStart 2699520 --xStop 154931044 |
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| == Model for Variant Calling == | | == Model for Variant Calling == |