1,555
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Filtering According to Depth and Map Quality
before a call is made. Without the --strict option, reads for individuals below the threshold are ignored.
before a call is made. Without the --strict option, reads for individuals below the threshold are ignored.
--minDepth ''threshold'' Positions where the read depth falls below this threshold will be excluded.
--minTotalDepth ''threshold'' Positions where the read depth falls below this threshold will be excluded.
--maxDepth ''threshold'' Positions where the read depth exceeds this threshold will be excluded.
--maxTotalDepth ''threshold'' Positions where the read depth exceeds this threshold will be excluded.
=== Sample Labels ===
=== Sample Labels ===
