Changes

** You can run on an EC2 cluster instance created by StarCluster.  

** You can run on an EC2 cluster instance created by StarCluster.  

GotCloud has been developed and tested on Linux Ubuntu 12.10 and 12.04.2 LTS.  While it should work on other Linux systems, they have not yet been tested.  

GotCloud has been developed and tested on Linux Ubuntu 12.10 and 12.04.2 LTS and Red Hat 6.6.  While it should work on other Linux systems, they have not yet been tested.  

=== GotCloud on Amazon ===

=== GotCloud on Amazon ===

** [[GotCloud: Alignment Sub-Pipelines|Alignment Sub-Pipelines]] - for if you do not want to run the entire Alignment Pipeline

** [[GotCloud: Alignment Sub-Pipelines|Alignment Sub-Pipelines]] - for if you do not want to run the entire Alignment Pipeline

* [[GotCloud: Variant Calling Pipeline|Variant Calling Pipeline]]

* [[GotCloud: Variant Calling Pipeline|Variant Calling Pipeline]]

* [[GotCloud: Indel Calling Pipeline|Indel Calling Pipeline]]

* Indel Calling Pipeline

* [[GotCloud: GenomeSTRiP Pipeline|GenomeSTRiP Pipeline]] (Structural Variation) - ''Coming Soon''

* [[GotCloud: GenomeSTRiP Pipeline|GenomeSTRiP Pipeline]] (Structural Variation)

* [[GotCloud: MEI Calling Pipeline|MEI Calling Pipeline]] - ''Coming Soon''

* MEI Calling Pipeline - ''Ask if you're interested''

You can also create your own pipelines.  Instructions are here:

You can also create your own pipelines.  Instructions are here: