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* [[Alignment Pipeline]]
* [[Variant Calling Pipeline (UMAKE)]]
Either pipeline can be run on a single machine:
* by installing a [[Pipeline Debian Package|debian package]]
* by installing a [[Pipeline RedHatPackage|red hat package]]
* on an [[Amazon Single Instance Setup|Amazon Single Instance]]
Run on a cluster:
* Installing debian/redhat on a cluster
* Using [[Amazon StarCluster Setup|Amazon StarCluster]]
