Changes

From Genome Analysis Wiki
Jump to navigationJump to search

GotCloud: Alignment Pipeline (view source)

Revision as of 17:48, 15 May 2014

71 bytes removed ,  17:48, 15 May 2014
no edit summary
Line 1: Line 1: −
= Alignment Pipeline =
      
Back to parent: [[GotCloud]]  
 
Back to parent: [[GotCloud]]  
    +
 +
== Overview of Alignment Pipeline Steps ==
 
The Alignment/Mapping Pipeline takes [http://en.wikipedia.org/wiki/FASTQ_format FASTQ files] and generates recalibrated [[BAM|BAM (Binary Sequence Alignment/Map format) files]] from them.  
 
The Alignment/Mapping Pipeline takes [http://en.wikipedia.org/wiki/FASTQ_format FASTQ files] and generates recalibrated [[BAM|BAM (Binary Sequence Alignment/Map format) files]] from them.  
 +
 +
[[File:MappingSteps.png]]
    
== Running the GotCloud Alignment Pipeline ==  
 
== Running the GotCloud Alignment Pipeline ==  
Line 27: Line 30:  
If you see "Successfully ran the test case, congratulations!", then you are ready to align samples.
 
If you see "Successfully ran the test case, congratulations!", then you are ready to align samples.
   −
== Overview of Alignment Pipeline Steps ==
  −
Here is an overview of the Alignment Pipeline:
  −
  −
[[File:MappingSteps.png]]
      
== Input Data:==  
 
== Input Data:==  
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/10332"

Navigation menu