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Revision as of 11:39, 7 January 2015
, 11:39, 7 January 2015→Configuration File
=== Configuration File ===
=== Configuration File ===
{{:GotCloud: Configuration}}
{{:GotCloud: Configuration}}
==== Recommended Settings ====
By default, the alignment pipeline uses bwa aln. We recommend you use bwa mem instead. To use that, set in your configuration file:
MAP_TYPE = BWA_MEM
==== Additional Required Settings ====
==== Additional Required Settings ====
