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, 12:03, 24 January 2014
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| * BWA_MAX_MEM = 2000000000 | | * BWA_MAX_MEM = 2000000000 |
| ** Maximum amount of memory used by samtools sort after running bwa | | ** Maximum amount of memory used by samtools sort after running bwa |
− | * JAVA_MEM = -Xmx4g
| |
− | ** Set the maximum size of the java memory allocation pool. Default is 4g, adjust that as necessary.
| |
| *BATCH_TYPE = mosix | | *BATCH_TYPE = mosix |
| ** Tells the cluster gateway to use mosix to send jobs to the client nodes. | | ** Tells the cluster gateway to use mosix to send jobs to the client nodes. |