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GotCloud: Alignment Sub-Pipelines (view source)

Revision as of 21:37, 17 March 2015

50 bytes added ,  21:37, 17 March 2015
→‎Example Configuration File
Line 214: Line 214:  
  REF = $(REF_DIR)/hs37d5.fa
 
  REF = $(REF_DIR)/hs37d5.fa
 
  DBSNP_VCF = $(REF_DIR)/dbsnp_135.b37.sites.vcf.gz
 
  DBSNP_VCF = $(REF_DIR)/dbsnp_135.b37.sites.vcf.gz
 +
HM3_VCF = $(REF_DIR)/hapmap3_r3_b37.sites.vcf.gz
    
==== Example Command Line ====
 
==== Example Command Line ====
Kleckner
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