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GotCloud: Alignment Sub-Pipelines (view source)

Revision as of 21:30, 18 March 2015

28 bytes added ,  21:30, 18 March 2015
→‎Inputs
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====Inputs====
 
====Inputs====
 
* Single merged, recalibrated, and deduped BAM file for each subject (stored in a [[#BAM_LIST File for bamQC|BAM_LIST File]])
 
* Single merged, recalibrated, and deduped BAM file for each subject (stored in a [[#BAM_LIST File for bamQC|BAM_LIST File]])
 +
* BAI file for each subject
 
* Reference files
 
* Reference files
 
* (Optional) configuration file to override default options
 
* (Optional) configuration file to override default options
Kleckner
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Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/13033"

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