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Revision as of 21:34, 18 March 2015
, 21:34, 18 March 2015→Outputs
====Outputs====
====Outputs====
Upon successful completion of the *bamQC* sub-pipeline, you should see the following files/subdirectories under the user specified output directory:
Upon successful completion of the *bamQC_createIndex* sub-pipeline, you should see the following files/subdirectories under the user specified output directory:
* A BAI file with the exact same path and name as the BAM file that was input, with *.bai on the end
* '''QCFiles/''' - contains quality control results
* '''QCFiles/''' - contains quality control results
** VerifyBamID Output - see [[VerifyBamID#A_guideline_to_interpret_output_files|VerifyBamID: A guideline to interpret output files]] for more information
** VerifyBamID Output - see [[VerifyBamID#A_guideline_to_interpret_output_files|VerifyBamID: A guideline to interpret output files]] for more information
