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*** '''''*/SAMPLE.qplot.stats'' - sample statistics'''
 
*** '''''*/SAMPLE.qplot.stats'' - sample statistics'''
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You should see .done and .OK files for each SAMPLE in the index file. If you do not see the .done and .OK files, then your *bamQC* sub-pipeline failed.
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You should see .done and .OK files for each SAMPLE in the index file. If you do not see the .done and .OK files, then your *bamQC_createIndex* sub-pipeline failed.
    
'''On success, the QCFiles/ folder contains the quality control output'''
 
'''On success, the QCFiles/ folder contains the quality control output'''
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