61
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchGotCloud: Binary Releases (view source)
Revision as of 23:29, 7 January 2016
, 23:29, 7 January 2016no edit summary
The [[GotCloud]] software has been developed and tested on Linux Ubuntu 12.10 and 12.04.2 LTS. While it should work on other Linux systems, they have not yet been tested. It is not supported on Windows.
The [[GotCloud]] software has been developed and tested on Ubuntu Linux 12.04 and newer and Red Hat Enterprise Linux 6. While it should work on other Linux systems, they have not yet been tested. It is not supported on Windows or Mac OS X.
The Binary Releases are available as:
The Binary Releases are available as:
* [[#Debian Packages|debian packages]] - require root access to install
* [[#GotCloud_Debian_Packages|debian packages]] - require root access to install
* [[#Tar Binary Releases|tarballs]] - anyone can untar
* [[#Tar Binary Releases|tarballs]] - anyone can untar
==GotCloud Debian Packages==
==GotCloud Debian Packages==
If you would like to install from:
If you would like to install from:
</code>
</code>
Where 'M.n' is replaced with the specific version numbers.
Where 'M.n' is replaced with the specific version numbers.
Installing Debian packages normally requires root access, however, you <b>can</b> install as a non-root user (see below).
See [[GotCloud: Versions]] for details on the changes for each version.
See [[GotCloud: Versions]] for details on the changes for each version.
</code>
</code>
====Install the GotCloud Debian bin Package====
====Install the GotCloud Debian Packages====
Installation requires one to have <b>root access</b> and uses <b>dpkg</b> which Debian users will recognize.
<b>Install Debian packages with root access</b>
Installation normally requires one to have <b>root access</b> and uses <b>dpkg</b> which Debian users will recognize.
We recommend you install the first one separately so you can easily
We recommend you install the first one separately so you can easily
identify messages about prerequisite files that need to be installed:
identify messages about prerequisite files that need to be installed:
# 'libssl0.9.8' is not installed, do 'sudo apt-get install libssl0.9.8'
# 'libssl0.9.8' is not installed, do 'sudo apt-get install libssl0.9.8'
#============================================================
#============================================================
...
<b>sudo dpkg -i ~/debs/gotcloud-test_*_amd64.deb</b>
</code>
<b>Install Debian packages without root access</b>
Installing Debian packages generally requires root access, however, you can install as a non-root user using the following instructions (bash commands shown here):
<code>
tempdir=/tmp/$$.gotcloud.removeme # Temp directory
destdir=$HOME # Where you want GotCloud installed
dpkg -x [path_to_deb_file]/gotcloud-bin_*_amd64.deb $tempdir
rsync -av --delete $tempdir/usr/local/gotcloud/* $destdir/gotcloud || exit 1
rm -rf $tempdir
dpkg -x [path_to_deb_file]/gotcloud-test_*_amd64.deb $tempdir
rsync -av --delete $tempdir/usr/local/gotcloud/* $destdir/gotcloud || exit 1
rm -rf $tempdir
$destdir/gotcloud/scripts/check_requirements.sh # Check requirements
</code>
</code>
If there were messages about missing packages, install them now
If there were messages about missing packages, install them with the commands shown by the script. Installing missing packages <b>will</b> require root access.
<code>
<code>
<b>sudo apt-get update</b>
<b>sudo apt-get update</b>
<b>sudo apt-get install java-common default-jre make libssl0.9.8</b>
<b>sudo apt-get install java-common default-jre make libssl0.9.8</b> # For example
</code>
</code>
===Testing the GotCloud Installation===
===Testing the GotCloud Installation===
'''rm -rf ~/testsnp''' # If no error
'''rm -rf ~/testsnp''' # If no error
</code>
</code>
== Tar Binary Releases ==
== Tar Binary Releases ==
See [[GotCloud: Versions]] for details on the changes for each version.
See [[GotCloud: Versions]] for details on the changes for each version.
====Fetch the Tar Releases====
====Fetch the Tar Releases====
tar xf gotcloud-*latest*.tgz
tar xf gotcloud-*latest*.tgz
===Testing the GotCloud Release===
===Testing the GotCloud Installation===
We recommend that at least the first time, you download the test packages so you can
We recommend that at least the first time, you download the test packages so you can
