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554 bytes added ,  11:14, 31 July 2013
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= Version Problems =
 
= Version Problems =
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== Version 1.08 ==
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; ERROR<nowiki>:</nowiki> Could not find umake/'''outputDir''' in '''currentDirectory'''
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: To work around this bug, specify an absolute path for OUT_DIR/--outdir
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: This is due to the aligner trying to use OUT_PREFIX to transform the output directory  to an absolute path, by prepending OUT_PREFIX.  But, OUT_PREFIX is a snpcall setting that sets the snpcall Makefile filename.  OUT_PREFIX will be deprecated in the next release.  The current OUT_PREFIX which refers to the snpcall Makefile filename will be renamed to something else.
    
== Version 1.07 ==
 
== Version 1.07 ==

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