3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Variant Calling Pipeline FAQs
::::20299969
::::20299969
::::20299994
::::20299994
=== Does Not Run ===
;"make_path" is not exported by the <nowiki>File::Path</nowiki> module<br />Can't continue after import errors at /home/chengu/program/gotcloud/bin/umake.pl line 21<br />BEGIN failed--compilation aborted at /home/chengu/program/gotcloud/bin/umake.pl line 21.
: This error occurs if you have an older version of Perl's <code>File::Path</code> module.
::Two solutions
::# Upgrade to the latest Perl File::Path module.
::# Replace all occurrances of <code>make_path</code> in <code>gotcloud/bin/</code> and <code>gotcloud/scripts/</code> with <code>mkpath</code>:
::#* '''gotcloud/bin/umake.pl''' - required to run snpcall
::#* '''gotcloud/scripts/vcfSplitChr.pl''' - required to run snpcall
::#* gotcloud/bin/genomestrip.pl - you only need to update this one if you want to run genomestrip
::#* gotcloud/scripts/bed-diff.pl - you only need to update this one if you plan to run bed-diff.pl
== Tutorial FAQs ==
== Tutorial FAQs ==
