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== Hard Filters ==
== Hard Filters ==
See [[GotCloud:_Variant_Calling_Options#Hard_Filtering_Options|Hard Filtering Options]] for configuration settings having to do with hard filters.
In GotCloud:
In GotCloud:
{|border="1" cellspacing="0" cellpadding="2"
{|border="1" cellspacing="0" cellpadding="2"
| MQ0_ || Fraction of bases with mapQ=0 || INFO:MQ0 > FILTER_MAX_MQ0/100. < 1 || 10
| MQ0_ || Fraction of bases with mapQ=0 || INFO:MQ0 > FILTER_MAX_MQ0/100. < 1 || 10
|-
|-
| IOR || Ratio of base-quality inflation || INFO:IOR > FILTER_MAX_IOR/100. < INT_MAX/100. || off
| IOR || Ratio of base-quality inflation || INFO:IOR > FILTER_MAX_IOR < INT_MAX || off
|-
|-
| AOZ || Alternate allele quality z-score || INFO:AOZ > FILTER_MAX_AOZ < INT_MAX || off
| AOZ || Alternate allele quality z-score || INFO:AOZ > FILTER_MAX_AOZ < INT_MAX || off
