3,045
edits
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| ns || Number of Samples With Coverage || INFO:NS < (FILTER_MIN_NS or FILTER_MIN_NS_FRAC * #samples) > 0 || .5*#samples
| ns || Number of Samples With Coverage || INFO:NS < (FILTER_MIN_NS or FILTER_MIN_NS_FRAC * #samples) > 0 || .5*#samples
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| AB || Allele Balance in Heterozygotes || INFO:AB > maxAB/100. < 100 ||
| AB || Allele Balance in Heterozygotes || INFO:AB > FILTER_MAX_ABL/100. < 100 || 70,65
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| STP || INFO:STP || maxSTP || < INT_MAX ||
| STP || INFO:STP || maxSTP || < INT_MAX ||
| ttt || INFO:TTT || minTTT || > INT_MIN ||
| ttt || INFO:TTT || minTTT || > INT_MIN ||
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| STR || INFO:STR || maxSTR/100. || < 100 ||
| STR || INFO:STR || maxSTR/100. || < 100 || 20,10
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| str || INFO:STR || minSTR/100. || > -100 ||
| str || INFO:STR || minSTR/100. || > -100 || -20,-10
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| LQZ || INFO:LQZ || maxLQZ || < INT_MAX ||
| LQZ || INFO:LQZ || maxLQZ || < INT_MAX ||
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| stz || INFO:STZ || minSTZ || > INT_MIN ||
| stz || INFO:STZ || minSTZ || > INT_MIN || -5,-10
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| STZ || INFO:STZ || maxSTZ || < INT_MAX ||
| STZ || INFO:STZ || maxSTZ || < INT_MAX || 5,10
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| lqz || INFO:LQZ || minLQZ || > INT_MIN ||
| lqz || INFO:LQZ || minLQZ || > INT_MIN ||
| CBZ || INFO:CBZ || maxCBZ || < INT_MAX ||
| CBZ || INFO:CBZ || maxCBZ || < INT_MAX ||
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| CBR || INFO:CBR || maxCBR/100. || < 100 ||
| CBR || INFO:CBR || maxCBR/100. || < 100 || 20,10
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| cbr || INFO:CBR || minCBR/100. || > -100 ||
| cbr || INFO:CBR || minCBR/100. || > -100 ||
| ior || INFO:IOR || minIOR/100. || > INT_MIN ||
| ior || INFO:IOR || minIOR/100. || > INT_MIN ||
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| IOR || INFO:IOR || maxIOR/100. || < INT_MAX ||
| IOR || INFO:IOR || maxIOR/100. ||FILTER_MAX_IOR < INT_MAX || off
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| AOZ || INFO:AOZ || maxAOZ || < INT_MAX ||
| AOZ || INFO:AOZ || maxAOZ || FILTER_MAX_AOZ < INT_MAX || off
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| AOI || INFO:AOI || maxAOI || < INT_MAX ||
| AOI || INFO:AOI > FILTER_MAX_AOI < INT_MAX || 5
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| MQ0_ || INFO:MQ0 || maxMQ0/100. || < 100 ||
| MQ0_ || INFO:MQ0 || maxMQ0/100. || < 100 || 10
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| MQ10_ || INFO:MQ10 || maxMQ10/100. || < 100 ||
| MQ10_ || INFO:MQ10 || maxMQ10/100. || < 100 || off
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| MQ20_ || INFO:MQ20 || maxMQ20/100. || < 100 ||
| MQ20_ || INFO:MQ20 || maxMQ20/100. || < 100 || off
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| fic || INFO:FIC || minFIC/100. || > INT_MIN ||
| fic || INFO:FIC || minFIC/100. || > INT_MIN || -20,-10
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| LQR || INFO:LQR || maxLQR/100. || < 100 ||
| LQR || INFO:LQR || maxLQR/100. || < 100 || 30,20
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| ABE || INFO:ABE || maxABE/100. || < 100 ||
| ABE || INFO:ABE || maxABE/100. || < 100 ||
