3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchGotCloud: Genetic Reference and Resource Files (view source)
Revision as of 12:47, 23 October 2014
, 12:47, 23 October 2014→Additional files generated from the reference fasta
* Already included with default reference files
* Already included with default reference files
* If you are using your own reference files, you will need to be sure to create these files
* If you are using your own reference files, you will need to be sure to create these files
** Be sure to create these additional files using the version of tool being run by GotCloud (by default they are in the gotcloud/bin/ directory)
** Be sure to create these additional files using the version of tool being run by GotCloud (by default they are in the <code>gotcloud/bin/</code> directory)
** In the commands below, replace ref.fa with the path/name of the reference fasta file
** In the commands below, replace <code>ref.fa</code> with the path/name of the reference fasta file
{| class="wikitable" style="margin: 1em 1em 1em 0; background-color: #f9f9f9; border: 1px #aaa solid; border-collapse: collapse;" border="1"
{| class="wikitable" style="margin: 1em 1em 1em 0; background-color: #f9f9f9; border: 1px #aaa solid; border-collapse: collapse;" border="1"
! Pipeline !! Step !! Required Extensions !! Command to Create !! More Information
! Pipeline !! Step !! Required Extensions !! Command to Create !! More Information
