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Revision as of 16:47, 23 October 2014
, 16:47, 23 October 2014→Downloadable Reference and Resource Files
== Downloadable Reference and Resource Files ==
== Downloadable Reference and Resource Files ==
*When running on Amazon, a default set of reference files are included in the GotCloud AMI.
'''Installing Genetic Reference and Resource Files'''
'''Installing Genetic Reference and Resource Files'''
Choose a destination for these files and install them as shown below. We'll assume you will use '''gotcloud/gotcloud.ref'''. Replace <code>gotcloud</code> with the path to where you installed gotcloud.
Choose a destination for these files and install them as shown below. We'll assume you will use '''gotcloud/gotcloud.ref'''. Replace <code>gotcloud</code> with the path to where you installed gotcloud.
* <code>REF_DIR</code> in your configuration file
* <code>REF_DIR</code> in your configuration file
* <code>--ref_dir</code> on the command-line
* <code>--ref_dir</code> on the command-line
'''Get the Resource Files'''
'''Get the Resource Files'''
<b>wget ftp://anonymous@share.sph.umich.edu/gotcloud/ref/h37-db135-v3.tgz</b>
<b>wget ftp://anonymous@share.sph.umich.edu/gotcloud/ref/h37-db135-v3.tgz</b>
</code>
</code>
'''Install the Resource Files'''
'''Install the Resource Files'''
