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Revision as of 14:40, 5 January 2015
, 14:40, 5 January 2015→Genetic Reference and Resource Files
| snpcall || Must be tabixed
| snpcall || Must be tabixed
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|-
| rowspan="2"|[[#INDEL VCF File(s)|INDEL VCF File(s)]] || INDEL_PREFIX || $(REF_DIR)/1kg.pilot_release.merged.indels.sites.hg19 || rowspan="2"|snpcall || rowspan="2"|Must be tabixed
| rowspan="2"|[[#INDEL VCF File(s)|INDEL VCF File(s)]] || INDEL_PREFIX || $(REF_DIR)/1kg.pilot_release.merged.indels.sites.hg19 || rowspan="2"|snpcall || .chr#.vcf extension will be appended
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|-
| INDEL_VCF || ''alternate configuration setting if all INDEL sites are in a single VCF rather than broken up by chromosome''
| INDEL_VCF || ''alternate configuration setting if all INDEL sites are in a single VCF rather than broken up by chromosome''||Must be tabixed
|}
|}
=== INDEL VCF File(s) ===
=== INDEL VCF File(s) ===
VCF file containing known INDEL positions
VCF file containing known INDEL positions
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