Changes

! Configuration Key !! Default Value

! Configuration Key !! Default Value

|-

|-

| DBSNP_VCF || $(REF_DIR)/dbsnp_135.b37.vcf.gz

| DBSNP_VCF || $(REF_DIR)/dbsnp_142.b37.vcf.gz

|}

|}

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'''Get the Resource Files'''

'''Get & Install the Resource Files'''

 

GotCloud makes use of various reference and other genetic resource files.

GotCloud makes use of various reference and other genetic resource files.

You are free to use your own files, of course, but we also are making the files we use available.

You are free to use your own files, of course, but we also are making the files we use available.

<code>

<ul>

<li> <div id="h37-db135">Human reference 37, dbsnp 135:</div></li>

  <b>wget ftp://anonymous@share.sph.umich.edu/gotcloud/ref/h37-db135-v3.tgz</b>

  <b>wget ftp://anonymous@share.sph.umich.edu/gotcloud/ref/h37-db135-v3.tgz</b>

  <b>tar xzf h37-db135-v3.tgz</b>

  <b>tar xzf h37-db135-v3.tgz</b>

  <b>rm -f h37-db135-v3.tgz</b>

  <b>rm -f h37-db135-v3.tgz</b>

</code>

<li><div id="h37-db142">Human reference 37, dbsnp 142:</div></li>

</ul>