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, 18:18, 10 February 2015
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| ! Command-line Flag !! Configuration Key !! Value Description !! Default Value | | ! Command-line Flag !! Configuration Key !! Value Description !! Default Value |
| |- | | |- |
− | | --chrs ''# #'' || CHRS || pace separated list of chromosomes to process || 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X | + | | --chrs ''# #'' || CHRS || space separated list of chromosomes to process || 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X |
| |- | | |- |
| | --region ''#:#-#'' || GENOMESTRIP_REGION || call region - skip regions of chromosome outside of specified region | | | --region ''#:#-#'' || GENOMESTRIP_REGION || call region - skip regions of chromosome outside of specified region |