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154 bytes removed
, 13:19, 6 October 2014
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| The chromosome 20 reference files required for the tutorial are included with the tutorial example data in $GCDATA/chr20Ref/. | | The chromosome 20 reference files required for the tutorial are included with the tutorial example data in $GCDATA/chr20Ref/. |
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− | If you are running more than just chromosome 20, you will need whole genome reference files which can be downloaded from [[GotCloudReference]]. | + | If you are running more than just chromosome 20, you will need whole genome reference files which can be downloaded from [[GotCloud: Genetic Reference and Resource Files]]. |
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− | TODO
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| If you are using these reference files, you will only need to specify REF_DIR in your configuration file to the full path to where they are installed. | | If you are using these reference files, you will only need to specify REF_DIR in your configuration file to the full path to where they are installed. |
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− | TODO, maybe only provide info on how to use the DEFAULT reference.
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− | Move detailed description to generic gotcloud documentation. This is too much info for the Tutorial page!!!!
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| '''Genome sequence reference file''' | | '''Genome sequence reference file''' |