Changes

From Genome Analysis Wiki
Jump to navigationJump to search
no edit summary
Line 13: Line 13:  
#* Note: as the source builds, many messages will scroll through your terminal.  You may even see some warnings.  These messages are normal and expected.  As long as the build does not end with an error, you have successfully built the source.
 
#* Note: as the source builds, many messages will scroll through your terminal.  You may even see some warnings.  These messages are normal and expected.  As long as the build does not end with an error, you have successfully built the source.
   −
  mkdir -p $GCHOME; cd $GCHOME   # Replace $GCHOME with the location where you want it installed.
+
  mkdir -p $GCHOME; cd $GCHOME   # Replace $GCHOME with the location where you want it installed.
 
  wget ftp://share.sph.umich.edu/gotcloud/gotcloud_latest.tgz  # Download
 
  wget ftp://share.sph.umich.edu/gotcloud/gotcloud_latest.tgz  # Download
  tar xvf gotcloud_latest.tgz --strip 1  # Extract
+
  tar xzf gotcloud_latest.tgz     # Extract
  cd src; make           # Build source
+
  cd gotcloud/src; make; cd ..    # Build source
 
   
 
   
GotCloud requires the following tools to be installed.
+
GotCloud requires the following tools to be installed.
You can run $GCHOME/scripts/check_requirements.sh
  −
...TBD – put in required programs/tools.
   
* java (java-common default-jre on ubuntu)
 
* java (java-common default-jre on ubuntu)
 
* make (make on ubuntu)
 
* make (make on ubuntu)
 
* libssl (libssl0.9.8 on ubuntu)
 
* libssl (libssl0.9.8 on ubuntu)
 
* gcc 4.4 or newer
 
* gcc 4.4 or newer
 +
 +
To check these requirements, run:
 +
scripts/check_requirements.sh .

Navigation menu