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Revision as of 14:29, 24 October 2014
, 14:29, 24 October 2014→Analysis Region Options
format (-end is optional): chr:start-end
format (-end is optional): chr:start-end
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| || UNIT_CHUNK || chunk size of SNP calling (GotCloud breaks up each chromosome into regions of this size) || 5000000
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| || LD_NSNPS || chunk size (number of SNPs) of genotype refinement || 10000
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| || LD_OVERLAP || overlapping # of SNPs between chunks for genotype refinement || 1000
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** see: [[GotCloud: FAQs#Targetted/Exome|GotCloud: FAQs->Targetted/Exome]]
** see: [[GotCloud: FAQs#Targetted/Exome|GotCloud: FAQs->Targetted/Exome]]
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=== Path Options ===
=== Path Options ===
