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, 18:45, 23 October 2014
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| ==== Chromosome X Calling ==== | | ==== Chromosome X Calling ==== |
− | Making calls on the X chromosome requires the user to specifty a PED file with sex information.
| + | For proper Chromosome X calling, it is recommended to specify a PED file with sex information: |
| * PED_INDEX = pedfile.ped | | * PED_INDEX = pedfile.ped |
| + | |
| + | Format of PED file: |
| + | :<code>familyID sampleID fatherID motherID sex</code> |
| + | * Only <code>sampleID</code> and <code>sex</code> are used |
| | | |
| === Example Configuration File === | | === Example Configuration File === |