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Revision as of 15:43, 6 November 2012
, 15:43, 6 November 2012Add image of umake steps
The Variant Calling Pipeline (UMAKE) takes recalibrated BAM files and detects SNPs and calls their genotypes, producing VCF files.
The Variant Calling Pipeline (UMAKE) takes recalibrated BAM files and detects SNPs and calls their genotypes, producing VCF files.
== Input Data:==
Here is an overview of the Variant Calling Pipeline:
[[File: umakeSteps.png]]
== Input Data==
*Aligned/Processed/Recalibrated BAM files
*Aligned/Processed/Recalibrated BAM files
*Index file containing Sample IDs & BAM file names
*Index file containing Sample IDs & BAM file names
