Changes

GotCloud: Variant Calling Pipeline (view source)

125 bytes removed , 11:15, 15 November 2012

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* Extend the target region by a given number of bases, for example: 50

** OFFSET_OFF_TARGET = 50

−

* Exclude off-target regions when using samtools view (may make command line too long)

−

** SAMTOOLS_VIEW_TARGET_ONLY = TRUE

==== Configure Reference Files ====

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==== Chromosome X Calling ====

* PED_INDEX = pedfile.ped

−

== Running ==

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