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For information on installing the releases, see: [[GotCloud#Install_GotCloud_Software|Install GotCloud Software]]
For information on installing the releases, see: [[GotCloud#Install_GotCloud_Software|Install GotCloud Software]]
== Version 1.08 (Full Release on 7/31/2013) ==
'''Aligner'''
* no aligner only changes
'''Variant Calling'''
* Add the ability to copy a glf to a different directory prior to running glfExtract or glfMultiples
* Remove chromosome Y from the default CHRS. Also allow CHRS to be set on the commandline via a comma separated list specified in --chrs
* Update glfMerge to skip glf files that only have a header.
* Change default FILTER_MAX_SAMPLE_DP to 1000 (from 20)
* Some SVM updates
'''Aligner & Variant Calling'''
* Fix bug in Conf.pm that caused a failure in some versions of perl
* Add the ability to set the GOTCLOUD_ROOT so you can test with an alternate align.pl/umake.pl script and still be able to access everything else from the standard gotcloud path.
* Cleanup the perldoc for align/snpcall
* Output all configuration settings into a file when running.
* Upgrade to most current libStatGen
* Compile as optimized
== Version 1.07 (Full Release on 7/3/2013) ==
== Version 1.07 (Full Release on 7/3/2013) ==
