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For information on issues/resolutions for specific versions, see: [[GotCloud:_FAQs#Version_Problems|FAQ: Version Problems]]
For information on issues/resolutions for specific versions, see: [[GotCloud:_FAQs#Version_Problems|FAQ: Version Problems]]
== Version 1.10 (Full Release on 8/22/2013) ==
'''Aligner'''
* Update gccalcstorage for better align estimates
'''Variant Calling'''
* Add additional comments to umake.pl
* Update vcf-summary to print the skipped counts
* Add option to specify the REF_FAI file used by the umake (gotcloud) script for determining CHRs and their lengths.
'''Aligner & Variant Calling'''
* Only print Configuration settings to a file if the file doesn't exist
== Version 1.09a (Full Release on 8/08/2013) ==
'''Aligner'''
* Fix relative paths
* Upgrade to newest samtools (and add source)
* Update gcrunsummary.pl - summary stats for the run.
* Upgrade to newer Mosaik
'''Variant Calling'''
* Fix minNS filter for odd number of samples. It used to give a fraction and then would be ignored.
'''Aligner & Variant Calling'''
* Cleanup phonehome script
* Cleanup gotcloud script and add ability to run perf/audria for dev purposes.
== Version 1.08 (Full Release on 7/31/2013) ==
== Version 1.08 (Full Release on 7/31/2013) ==
* Update to always require REF
* Update to always require REF
** this fixes bug that ''ldrefine'' was not checking REF or adding the optional prefix to it.
** this fixes bug that ''ldrefine'' was not checking REF or adding the optional prefix to it.
== Version 1.05 (Full Release on 4/17/2013) ==
== Version 1.05 (Full Release on 4/17/2013) ==
