3,045
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Changes
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Jump to navigationJump to search→Version 1.12 (Full Release on 1/17/2014)
* Add some Copyright information
* Add some Copyright information
* Fix printing of a failed run's return code
* Fix printing of a failed run's return code
* Upgrade to latest [[LibStatGen_Download#Official Releases|libStatGen]] & [[BamUtil#Release_of_just_BamUtil_.28does_not_include_libStatGen.29|bamUtil]]
* Upgrade to latest [[LibStatGen_Download#Official Releases|libStatGen]] & [[BamUtil#Release_of_just_BamUtil_.28does_not_include_libStatGen.29|bamUtil]]. See links for version details.
** Slightly newer than 1.0.10 for both - versions on 1/17/2014.
** Slightly newer than 1.0.10 for both - versions on 1/17/2014.
** dedup & recab now ignore Secondary reads
** dedup & recab now ignore Secondary reads
* samtools
* samtools
** Update samtools index to return an error code if it fails to build the index
** Update samtools index to return an error code if it fails to build the index
'''Aligner'''
'''Aligner'''
'''Genotype Refinement'''
'''Genotype Refinement'''
* Add a default number of states to Thunder
* Add a default number of states to Thunder
== Version 1.11 (Full Release on 9/6/2013) ==
== Version 1.11 (Full Release on 9/6/2013) ==
