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=== Formulation ===
Hardy Weinberg equilibrium is expected in a panmictic population. The following formulation is a likelihood ratio test statistic that incorporates genotype uncertainty via genotype likelihoods.
Hardy Weinberg equilibrium is expected in a panmictic population. The following formulation is a likelihood ratio test statistic that incorporates genotype uncertainty via genotype likelihoods.
<math>P(R_{k}|\textbf{p})</math> is the probability of observing the reads for individual <math>k</math> assuming that a locus observes HWE.
<math>P(R_{k}|\textbf{p})</math> is the probability of observing the reads for individual <math>k</math> assuming that a locus observes HWE.
