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Jump to navigationJump to searchIMPUTE2: 1000 Genomes Imputation Cookbook (view source)
Revision as of 06:43, 5 August 2011
, 06:43, 5 August 2011→Content
== Content ==
== Content ==
This page documents how to carry out imputation using [http://mathgen.stats.ox.ac.uk/impute/impute_v2.html IMPUTE2] software (developed by Jonathan Marchini and Bryan Howie) and 1000 Genomes reference panel haplotypes.
This page documents how to carry out imputation using [http://mathgen.stats.ox.ac.uk/impute/impute_v2.html IMPUTE2] software (developed by Jonathan Marchini and Bryan Howie) and 1000 Genomes reference panel haplotypes. As of now, the most recent version of the 1000 Genome Project haplotypes are the Phase I Interim release haplotypes (available in IMPUTE2 format from [http://mathgen.stats.ox.ac.uk/impute/data_download_1000G_phase1_interim.html this link]). This haplotype set is more complete and more accurate than prior 1000 Genome Project haplotypes and is recommended for all imputation based analyses.
= Before Imputation =
= Before Imputation =
