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, 06:48, 5 August 2011
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| == Content == | | == Content == |
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− | This page documents how to carry out imputation using [http://mathgen.stats.ox.ac.uk/impute/impute_v2.html IMPUTE2] software (developed by Jonathan Marchini and Bryan Howie) and 1000 Genomes reference panel haplotypes. As of now, the most recent version of the 1000 Genome Project haplotypes are the Phase I Interim release haplotypes (available in IMPUTE2 format from [http://mathgen.stats.ox.ac.uk/impute/data_download_1000G_phase1_interim.html this link]). This haplotype set is more complete and more accurate than prior 1000 Genome Project haplotypes and is recommended for all imputation based analyses. | + | This page documents how to carry out imputation using [http://mathgen.stats.ox.ac.uk/impute/impute_v2.html IMPUTE2] software (developed by Jonathan Marchini and Bryan Howie) and 1000 Genomes reference panel haplotypes. |
| + | For information on how to carry out 1000 Genomes Imputation using [[Minimac]] or [[MaCH]], see [[Minimac: 1000 Genomes Imputation Cookbook]] or [[MaCH: 1000 Genomes Imputation Cookbook]]. |
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| + | As of now, the most recent version of the 1000 Genome Project haplotypes are the Phase I Interim release haplotypes (available in IMPUTE2 format from [http://mathgen.stats.ox.ac.uk/impute/data_download_1000G_phase1_interim.html this link]). This haplotype set is more complete and more accurate than prior 1000 Genome Project haplotypes and is recommended for all imputation based analyses. |
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| = Before Imputation = | | = Before Imputation = |