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Jump to navigationJump to searchIMPUTE2: 1000 Genomes Imputation Cookbook (view source)
Revision as of 19:10, 27 August 2012
, 19:10, 27 August 2012→X-Chromosome Imputation
= X-Chromosome Imputation =
= X-Chromosome Imputation =
Please refer to IMPUTE2 example for chromosome X imputation and IMPUTE2 chromosome X options. Please note the difference on the pseudoautosomal and non-pseudoautosomal regions. We recommend not doing pre-phasing for X-chromosome imputation. One reason is that SHAPEIT isn't currently designed to work with X chromosome data (we are not sure whether IMPUTE2 works or not).
Please refer to IMPUTE2 example for chromosome X imputation and IMPUTE2 chromosome X options. Please note the difference on the pseudoautosomal and non-pseudoautosomal regions.
= Association Analysis =
= Association Analysis =
