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[[https://statgen.sph.umich.edu/wiki/Category:Code_Samples Internal Resources]]
[[https://statgen.sph.umich.edu/wiki/Category:Code_Samples Internal Resources]]
* How to use git
* How to use git
Git is a version control software. We have useful library codes and useful applications (see Sequence Analysis Tools section in [[http://genome.sph.umich.edu/wiki/Main_Page]]).
Git is a version control software. We have useful library codes and useful applications (see Sequence Analysis Tools section in [[http://genome.sph.umich.edu/wiki/Main_Page]]).
A dedicated introduction page is here:
A dedicated introduction page is here:
[[https://statgen.sph.umich.edu/wiki/How_To_Use_Git How to use git]]
[[https://statgen.sph.umich.edu/wiki/How_To_Use_Git How to use git]]
== Unix ==
CSG Documentation [[http://csg.sph.umich.edu/docs/ AWK, BASH, UNIX commands and etc.]]
== Tools ==
Samtools [[http://samtools.sourceforge.net/samtools.shtml Manual]]
Samtools [[http://samtools.sourceforge.net/samtools.shtml Manual]]
BWA[[http://bio-bwa.sourceforge.net/bwa.shtml Homepage ]]
BWA[[http://bio-bwa.sourceforge.net/bwa.shtml Homepage ]]
== Resources ==
* SAM/VCF format documentation
* SAM/VCF format documentation
[[http://genome.sph.umich.edu/wiki/VCF VCF specification]]
[[http://genome.sph.umich.edu/wiki/VCF VCF specification]]
Group Chat [[https://statgen.sph.umich.edu/wiki/Instant_Messaging instant Messaging]]
Group Chat [[https://statgen.sph.umich.edu/wiki/Instant_Messaging instant Messaging]]
