Difference between revisions of "Introduction to new students"
From Genome Analysis Wiki
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Introduction to New Students | Introduction to New Students | ||
| − | + | = Programming = | |
* R/C++/perl/python code snipplets / toy examples of various packages | * R/C++/perl/python code snipplets / toy examples of various packages | ||
[[https://statgen.sph.umich.edu/wiki/Category:Code_Samples Internal Resources]] | [[https://statgen.sph.umich.edu/wiki/Category:Code_Samples Internal Resources]] | ||
| Line 8: | Line 8: | ||
[[https://statgen.sph.umich.edu/wiki/How_To_Use_Git How to use git]] | [[https://statgen.sph.umich.edu/wiki/How_To_Use_Git How to use git]] | ||
| − | + | = Unix = | |
CSG Documentation [[http://csg.sph.umich.edu/docs/ AWK, BASH, UNIX commands and etc.]] | CSG Documentation [[http://csg.sph.umich.edu/docs/ AWK, BASH, UNIX commands and etc.]] | ||
| − | + | = Tools = | |
Samtools [[http://samtools.sourceforge.net/samtools.shtml Manual]] | Samtools [[http://samtools.sourceforge.net/samtools.shtml Manual]] | ||
| Line 21: | Line 21: | ||
BWA[[http://bio-bwa.sourceforge.net/bwa.shtml Homepage ]] | BWA[[http://bio-bwa.sourceforge.net/bwa.shtml Homepage ]] | ||
| − | + | = Resources = | |
| − | =SAM/VCF format documentation = | + | == Sequence related info == |
| + | [[http://seqanswers.com/]] | ||
| + | |||
| + | ==SAM/VCF format documentation == | ||
[[http://samtools.sourceforge.net/SAM1.pdf SAM specification]] | [[http://samtools.sourceforge.net/SAM1.pdf SAM specification]] | ||
Revision as of 18:41, 15 July 2010
Introduction to New Students
Programming
- R/C++/perl/python code snipplets / toy examples of various packages
- How to use git
Git is a version control software. We have useful library codes and useful applications (see Sequence Analysis Tools section in [[1]]). A dedicated introduction page is here: [How to use git]
Unix
CSG Documentation [AWK, BASH, UNIX commands and etc.]
Tools
Samtools [Manual]
PLINK [Homepage]
MERLIN [Homepage]
BWA[Homepage ]
Resources
[[2]]
SAM/VCF format documentation
Group Chat [instant Messaging]
