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From Genome Analysis Wiki
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We work with the following formats:
We work with the following formats:
* [http://en.wikipedia.org/wiki/FASTQ_format FASTQ] - used to store sequence reads and their quality scores
* [http://en.wikipedia.org/wiki/FASTQ_format FASTQ] - used to store sequence reads and their quality scores
* [[SAM]]/[[BAM]] - used to store additional information from what is in a FASTQ file possibly including alignment information
* [[SAM]]/[[BAM]] - used to store additional information from what is in a FASTQ file, possibly including alignment information
* [[VCF]]: https://statgen.sph.umich.edu/wiki/VCF_4.0
* [[VCF]]: https://statgen.sph.umich.edu/wiki/VCF_4.0
* [http://genome.sph.umich.edu/wiki/GLF GLF]
* [http://genome.sph.umich.edu/wiki/GLF GLF]
