Changes

== Minimum read length requirement ==

== Minimum read length requirement ==

&nbsp; Keep in mind that the requirement of minimum color space read length for KARMA is twice the size of word plus two (including leading primer).<br> &nbsp; (For nucleotide space, the minimum length requirement is twice the word size.)<br> &nbsp; For example, KARMA use word size of 15 by default, so it will try to map color space reads that are longer than 32 base pairs.<br>

Keep in mind that KARMA requires color space reads that are at least twice as long as the index word size plus two (including the leading primer base).&nbsp; (For nucleotide space, the minimum read length is twice the word size.)&nbsp; For example, KARMA uses an index word size of 15 by default, so it will only map color space reads that are 32 base pairs or longer.<br>

== Auxiliary tools ==

== Auxiliary tools ==