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, 06:42, 15 November 2009
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| = Overview = | | = Overview = |
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− | KARMA(K-tuple Alignment with Rapid Matching Algorithm) is able to map 35bp single end color space reads at the speed of approximately $1.2-2.0 \times 10^9$ reads per hour using Intel Xeon X760 2.66GHz and 128G memory. | + | KARMA(K-tuple Alignment with Rapid Matching Algorithm) is able to map 35bp single end color space reads at the speed of approximately <math>1.2-2.0 \times 10^9</math> reads per hour using Intel Xeon X760 2.66GHz and 128G memory. |
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| We summarize software requirments as following: | | We summarize software requirments as following: |
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| = <br> Additional Information<br> = | | = <br> Additional Information<br> = |
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− | == {{anchor|foo}}Input file requirement<br> == | + | == {{anchor|sec4.1}}Input file requirement<br> == |
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| KARMA require input files in valid color space FASTQ format.<br> We require the length of reads(including leading primer) should equal to the length of its quality string.<br> <br> A valid example of color space FASTQ file:<br> | | KARMA require input files in valid color space FASTQ format.<br> We require the length of reads(including leading primer) should equal to the length of its quality string.<br> <br> A valid example of color space FASTQ file:<br> |