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37 bytes added
, 22:34, 30 January 2013
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| [[File:LASER-Workflow.png|thumb|center|alt=LASER workflow|400px|LASER Workflow]] | | [[File:LASER-Workflow.png|thumb|center|alt=LASER workflow|400px|LASER Workflow]] |
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− | *Seq file: a text file processed from BAM (alignment) files. (See [[#Process sequencing file (BAM)]] for how to obtain seq file) | + | *Seq file: a text file processed from BAM (alignment) files. (See [[#Process sequencing file (BAM)|Processing sequencing file]] for how to obtain seq file) |
− | *Geno file: genotypes of reference panels. (See [[#Geno file]] to understand geno file format) | + | *Geno file: genotypes of reference panels. (See [[#Geno file|Geno file]] to understand geno file format) |
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| In coord files of reference, LASER calculated the Principal Component Analysis (PCA) results of the reference samples; In coord files of sequencing samples, LASER infers their ancestries by placing their ancestry coordinates on the reference coordinates. | | In coord files of reference, LASER calculated the Principal Component Analysis (PCA) results of the reference samples; In coord files of sequencing samples, LASER infers their ancestries by placing their ancestry coordinates on the reference coordinates. |