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4 bytes added ,  14:19, 3 February 2013
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The columns are: popID means "population ID", indivID means "individual ID", L1 means number of loci has been covered, Ci means "average coverage", t means Procrustes similarity.
 
The columns are: popID means "population ID", indivID means "individual ID", L1 means number of loci has been covered, Ci means "average coverage", t means Procrustes similarity.
PC1, PC2 means coordinates of first and second principal components. You may notice Ci and t are omitted in the coord files of reference samples. The reason is that reference samples use  
+
PC1, PC2 means coordinates of first and second principal components. You may notice L1, Ci, and t are omitted in the coord files of reference samples. The reason is that reference samples use genotypes and do not have coverage information.
genotypes and do not have coverage information.
      
== Site file ==
 
== Site file ==
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