From Genome Analysis Wiki
Jump to navigationJump to search
4 bytes added
, 14:19, 3 February 2013
Line 137: |
Line 137: |
| | | |
| The columns are: popID means "population ID", indivID means "individual ID", L1 means number of loci has been covered, Ci means "average coverage", t means Procrustes similarity. | | The columns are: popID means "population ID", indivID means "individual ID", L1 means number of loci has been covered, Ci means "average coverage", t means Procrustes similarity. |
− | PC1, PC2 means coordinates of first and second principal components. You may notice Ci and t are omitted in the coord files of reference samples. The reason is that reference samples use | + | PC1, PC2 means coordinates of first and second principal components. You may notice L1, Ci, and t are omitted in the coord files of reference samples. The reason is that reference samples use genotypes and do not have coverage information. |
− | genotypes and do not have coverage information. | |
| | | |
| == Site file == | | == Site file == |