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'''LibStatGen.1.0.11 Release Notes'''
'''LibStatGen.1.0.14 Release Notes'''
*[[Media:LibStatGen.1.0.11.tar.gz|LibStatGen.1.0.11.tar.gz]] - Released 2/28/2014
*Version 1.0.14 - Released 7/8/2015
** https://github.com/statgen/libStatGen/archive/v1.0.14.tar.gz
** Contains classes for general processing (string, reference file, parameters), bam, glf, fastq, and vcf
*** General Updates:
**** Compiling Updates:
***** PedigreeLoader.cpp - fix bool vs int definition
***** InputFile - add 'const' to isOpen and ifeof methods. Also add comments about usage of 'operator >>'
*** Bam/Tabix Updates:
**** Update how the index is stored in memory to not preallocate the maximum number of bins for each reference as this could use a lot of memory if there are a lot of references
*** BAM Updates:
**** SamFilter
***** Update to clear MapQ and N/A flags when marking as unmapped
***** Fix bug in clipping logic that didn't properly adjust the start position if the read was already clipped
*** VCF Updates:
**** Add missing include for c++11
'''LibStatGen.1.0.13 Release Notes'''
*Version 1.0.13 - Released 2/20/2015
** https://github.com/statgen/libStatGen/archive/v1.0.13.tar.gz
** Contains classes for general processing (string, reference file, parameters), bam, glf, fastq, and vcf
*** General Updates:
**** Added knetfile support to InputFile (only for bgzf files if KNET_ON=1 is set on compile line
**** GzipHeader - fix signed/unsigned comparison compile issue
**** Upgrade bgzf (also allow append mode)
*** Makefiles Updates:
**** Update dependencies to fix/improve some compiling issues
*** PhoneHome Updates:
**** Allow PhoneHome to be a legacy parameter
**** Update new version available message to stand out more
**** Fix bugs in checks for new version since it wasn't finding it.
*** BAM Updates:
**** SamReferenceInfo operator== - fix to not check hash, since hash could be different for same info
**** Pileup - improve error message for buffer overrun
*** VCF Updates:
**** Add option to update GT field
**** Add subset samples parameter to ReadRecord
**** Improve handling of adding CO header
''' Older Releases'''
*[[Media:LibStatGen.1.0.12.tgz|LibStatGen.1.0.12.tgz]] - Released 5/14/2014
** Contains classes for general processing (string, reference file, parameters), bam, glf, fastq, and vcf
*** General Updates:
**** Improve Makefiles for adding additional libraries/creating external libraries
**** Cleanup compiling for mingw
**** Cleanup Copyrights
*** BAM Updates:
**** Update rmTags & getTagsString to accept ',' delimiter rather than just ';'
*[[Media:LibStatGen.1.0.11.tgz|LibStatGen.1.0.11.tar.gz]] - Released 2/28/2014
** Contains classes for general processing (string, reference file, parameters), bam, glf, fastq, and vcf
** Contains classes for general processing (string, reference file, parameters), bam, glf, fastq, and vcf
*** General Updates:
*** General Updates:
*** VCF Updates:
*** VCF Updates:
**** Move allele count logic from VcfFileReader into VcfRecord.
**** Move allele count logic from VcfFileReader into VcfRecord.
*[[Media:LibStatGen.1.0.10.tar.gz|LibStatGen.1.0.10.tar.gz]] - Released 1/2/2014
*[[Media:LibStatGen.1.0.10.tar.gz|LibStatGen.1.0.10.tar.gz]] - Released 1/2/2014
** Contains classes for general processing (string, reference file, parameters), bam, glf, fastq, and vcf
** Contains classes for general processing (string, reference file, parameters), bam, glf, fastq, and vcf
