Changes

Sources of SQLite database tables;

Sources of SQLite database tables;

HapMap phased haplotypes: http://hapmap.ncbi.nlm.nih.gov/downloads/phasing/2007-08_rel22/phased

*[https://statgen.sph.umich.edu/locuszoom/download/ LocusZoom code]

1000G phased haplotypes: ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/pilot_data/release/2010_03/pilot1

*[http://hapmap.ncbi.nlm.nih.gov/downloads/phasing/2007-08_rel22/phased HapMap phased haplotypes]

 

*[ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/pilot_data/release/2010_03/pilot1 1000 Genomes phased haplotypes]

SNP position: http://genome.ucsc.edu

*[http://www.ncbi.nlm.nih.gov/projects/SNP/ dbSNP position] via the [http://genome.ucsc.edu UCSC Browser]

 

*[http://www.ncbi.nlm.nih.gov/RefSeq/ Gene and exon positions] via the [http://genome.ucsc.edu UCSC Browser].  We filtered SNPs that map to more than one location or where no allele matches the reference sequence

SNP annotation for 1000G SNPs: Custom-designed by Peter Chines (pchines@mail.nih.gov)

 

*[ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/pilot_data/release/2010_03/pilot1 Recombination rates from HapMap]

Gene and exon positions: http://genome.ucsc.edu

 

Recombination rates from HapMap: ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/pilot_data/release/2010_03/pilot1

== Input  ==

== Input  ==