487
edits
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! scope="col" width="1225px" | Description
! scope="col" width="1225px" | Description
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| <font face=Courier>--'''chr''' <output_prefix></font>
| <font face=Courier>--'''chr''' <chromosome></font>
| This option includes all sites with identifiers matching the value of chromosome. (m3vcftools only handles single chromosome files)
| This option includes all sites with identifiers matching the value of chromosome. (m3vcftools only handles single chromosome files)
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| <font face=Courier>--'''from-bp'''</font>
| <font face=Courier>--'''from-bp''' <integer></font>
| This option specifies a lower bound (inclusive) for the range of sites to be processed. This option must be used in conjunction with <font face=Courier>--'''chr''' <output_prefix></font>.
| This option specifies a lower bound (inclusive) for the range of sites to be processed. This option must be used in conjunction with <font face=Courier>--'''chr''' <output_prefix></font>.
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|-
| <font face=Courier>--'''to-bp'''</font>
| <font face=Courier>--'''to-bp''' <integer></font>
| This option specifies an upper bound (inclusive) for the range of sites to be processed. This option must be used in conjunction with <font face=Courier>--'''chr''' <output_prefix></font>
| This option specifies an upper bound (inclusive) for the range of sites to be processed. This option must be used in conjunction with <font face=Courier>--'''chr''' <output_prefix></font>
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| <font face=Courier>--'''positions'''</font>
| <font face=Courier>--'''positions''' <filename></font>
| This option is used to include a set of sites on the basis of list of positions in the given file. Each line of the input file should contain a (tab-separated) chromosome and position. The file can have comment lines that start with a "#", they will be ignored.
| This option is used to include a set of sites on the basis of list of positions in the given file. Each line of the input file should contain a (tab-separated) chromosome and position. The file can have comment lines that start with a "#", they will be ignored.
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| <font face=Courier>--'''exclude-positions'''</font>
| <font face=Courier>--'''exclude-positions''' <filename></font>
| This option is used to exclude a set of sites on the basis of list of positions in the given file. . Each line of the input file should contain a (tab-separated) chromosome and position. The file can have comment lines that start with a "#", they will be ignored.
| This option is used to exclude a set of sites on the basis of list of positions in the given file. . Each line of the input file should contain a (tab-separated) chromosome and position. The file can have comment lines that start with a "#", they will be ignored.
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