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Additional details on the [[METAL COLUMNCOUNTING|COLUMNCOUNTING]] option are available.
Additional details on the [[METAL COLUMNCOUNTING|COLUMNCOUNTING]] and [[METAL EFFECTLABEL|EFFECTLABEL]] options are available.
=== Filtering Input Files ===
=== Filtering Input Files ===
=== Genomic Control Correction of Input Statistics ===
=== Genomic Control Correction of Input Statistics ===
GENOMICCONTROL [ON|OFF|VALUE] (default = OFF)
GENOMICCONTROL [ON|OFF|VALUE|LIST snps.txt](default = OFF)
Additional details on this option are [[METAL GENOMICCONTROL|available]].
=== General Analysis Control ===
=== General Analysis Control ===
ANALYZE [HETEROGENEITY]
ANALYZE [HETEROGENEITY]
CLEAR
CLEAR
Additional details on the [[METAL LOGPVALUE|LogPValue]] and [[METAL VERBOSE|Verbose]] commands are available.
=== Script Control ===
SOURCE [FILENAME]
Additional details on this command are [[METAL SOURCE|available]].
