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http://www.sph.umich.edu/csg/abecasis/Merlin/tour/input_files.html. <br>
http://www.sph.umich.edu/csg/abecasis/Merlin/tour/input_files.html. <br>
<strong>Pedigree File (mandatory)</strong><br>
=== <strong>Pedigree File (mandatory)</strong><br> ===
Each person contributes to one line in a pedigree file. Required fields are (1) the first five fixed fields corresponding to five key pieces of information (namely: family person father mother sex), and (2) genotype fields. Phenotype fields are allowed inbetween but will not be used by the program. <br>
Each person contributes to one line in a pedigree file. Required fields are (1) the first five fixed fields corresponding to five key pieces of information (namely: family person father mother sex), and (2) genotype fields. Phenotype fields are allowed inbetween but will not be used by the program. <br>
This sample.ped contains 2 individuals. The first individual is from family fam1 with person ID indiv1 and no parental information available (father = 0, mother = 0). This person is a male (sex = 1). His genotypes are missing at the first and third markers (0/0 and ./.), and is 2/3 (C/G) at the second marker. Similarly, the second individual is from family fam2 with person ID indiv2 and no parental information available (father = 0, mother = 0). This person is a female (sex = 2). Her genotypes are 1/2 (A/C) at the first locus, 2/2 (Homozygous for C) at the second locus and 1/4 (A/T) at the third locus.
This sample.ped contains 2 individuals. The first individual is from family fam1 with person ID indiv1 and no parental information available (father = 0, mother = 0). This person is a male (sex = 1). His genotypes are missing at the first and third markers (0/0 and ./.), and is 2/3 (C/G) at the second marker. Similarly, the second individual is from family fam2 with person ID indiv2 and no parental information available (father = 0, mother = 0). This person is a female (sex = 2). Her genotypes are 1/2 (A/C) at the first locus, 2/2 (Homozygous for C) at the second locus and 1/4 (A/T) at the third locus.
<strong>Marker Information File (mandatory)</strong><br>
=== <strong>Marker Information File (mandatory)</strong><br> ===
<sample.dat><br>
<sample.dat><br>
<strong>Optional Input files</strong><br>
=== <strong>Optional Input files</strong><br> ====
External/reference (e.g., HapMap) input files (snp and haplotype files) are optional.
==== External/reference (e.g., HapMap) input files (snp and haplotype files) are optional. ====
Mach 1.0 accepts two different formats: MACH format or HapMap format. <br>
Mach 1.0 accepts two different formats: MACH format or HapMap format. <br>
