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Jump to navigationJump to searchMaCH: 1000 Genomes Imputation Cookbook (view source)
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== Quality Filtering ==
For 1000 Genome SNPs, we currently recommend that any markers with estimated r<sup>2</sup> of <0.5 should be treated with caution. This is a bit more conservative than the threshold of 0.3 we recommend for HapMap; but 1000 Genome SNP genotypes are also (as of March 2010) of lower quality.
