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, 10:22, 4 June 2010
For compatibility with older applications that only accept integer allele codes in pedigree files, MaCH can accept pedigree files that encode bases A, C, G, T as 1, 2, 3, 4. Here is an example:
'''<Example of a pedigree file with numerically coded alleles>'''
FAM1001 ID1234 0 0 M 1 1 1 2 2 2
FAM1002 ID5678 0 0 F 1 2 2 2 3 3
...
'''<End of pedigree file>'''
The corresponding base-pair coded pedigree would be: