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Revision as of 10:24, 4 June 2010
, 10:24, 4 June 2010no edit summary
For compatibility with older applications that only accept integer allele codes in pedigree files, MaCH can accept pedigree files that encode bases A, C, G, T as 1, 2, 3, 4. Here is an example:
For compatibility with older applications that only accept integer allele codes in pedigree files, MaCH can accept pedigree files that encode bases A, C, G, T as 1, 2, 3, 4. Here is an example:
'''<Example of a pedigree file with numerically coded alleles>'''
'''<Example of a pedigree file with numerically coded alleles>'''
FAM1001 ID1234 0 0 M 1 1 1 2 2 2
FAM1001 ID1234 0 0 M 1 1 1 2 2 2
FAM1002 ID5678 0 0 F 1 2 2 2 3 3
FAM1002 ID5678 0 0 F 1 2 2 2 3 3
...
...
'''<End of pedigree file>'''
'''<End of pedigree file>'''
The corresponding base-pair coded pedigree would be:
The corresponding base-pair coded pedigree would be:
'''<Example of a pedigree file with base-pair coded alleles>'''
FAM1001 ID1234 0 0 M A A A C C C
FAM1002 ID5678 0 0 F A C C C G G
...
'''<End of pedigree file>'''
